Publications

ViTally Consistent: Scaling Biological Representation Learning for Cell Microscopy

Kenyon-Dean, K., Wang, Z.J., Urbanik, J., Donhauser, K., Hartford, J., Saberian, S., Sahin, N*., Bendidi, I., Celik, S., Fay, M., Vera, J.S.R., Haque, I.S., and Kraus, O.
Foundation Models for Science Workshop, 38th Conference on Neural Information Processing Systems (NeurIPS 2024), 2024

Phenomics approaches to understand genetic networks and gene function in yeast

Yeung, C.H.L., Sahin, N*., and Andrews, B.J.
Biochemical Society Transactions, 2022

Systematic genetics and single cell image analysis reveals widespread pleiotropy and cell-to-cell variability

Mattiazzi Ušaj, M*., Sahin, N*., Friesen, H., Pons, C., Ušaj, M., Masinas, M., Shkurin, A., Morris, Q., Boone, C., and Andrews, B.J.
Molecular Systems Biology, 2020

Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig

Rubanova, Y., Rujan, S., Harrigan, C.F., Li, R., Wintersinger, J., Sahin, N., Deshwar, A., Morris, Q.
Nature Communications, 2020

Characterizing ABC-transporter substrate-likeness using a clean-slate genetic background

Sokolov, A., Ashenden, S., Sahin, N., Lewis, R., Erdem, N., Ozaltan, E., Bender, A., Roth, F.P. and Cokol, M.
Frontiers in Pharmacology, 2019

Machine learning and computer vision approaches for phenotypic profiling

Grys, B.T., Lo, D.S., Sahin, N., Kraus, O.Z., Morris, Q., Boone, C., and Andrews, B.J.
Journal of Cell Biology, 2017

Chemogenomics and orthology-based design of antibiotic combination therapies

Chandrasekaran, S., Cokol-Cakmak, M., Sahin, N., Yilancioglu, K., Kazan, H. Collins, J.J. and Cokol, M.
Molecular Systems Biology, 2016